knitr doest recognise installed packages, though no problems running chunks individualy
i'm having problems knitting an R markdown document. the particular chunk that's giving mt trouble uses the "tableone" package, and gives the following error:
"Error in library(tableone): there is no package called 'tableone' "
the code chunk is (if necessary i'll upload some of the the actual data):
>pt.table1<-patient.table[,-unwanted.cols]%>%tbl_df()
>catVars<-pt.table1[sapply(pt.table1,class)=="integer"]%>%colnames()
>my.tab2<-CreateTableOne(data = pt.table1,strata =
>"cerebrovascular.pt",factorVars = catVars)
>print(my.tab2)
>summary(my.tab2)
this package is properly installed,and the chunk works fine if i just run it by itself (such as with CTRL ALT C), and of course it works when ran through the console.
i have a similar problem inn a different chunk with package 'e1071'.
other packages in the rest of the code chunks work fine.
i"l appreciate any help!
thanx.
t.
r-markdown
asked Nov 14 '18 at 13:41
Tomer MannTomer Mann
61
add a comment |
i'm having problems knitting an R markdown document. the particular chunk that's giving mt trouble uses the "tableone" package, and gives the following error:
"Error in library(tableone): there is no package called 'tableone' "
the code chunk is (if necessary i'll upload some of the the actual data):
>pt.table1<-patient.table[,-unwanted.cols]%>%tbl_df()
>catVars<-pt.table1[sapply(pt.table1,class)=="integer"]%>%colnames()
>my.tab2<-CreateTableOne(data = pt.table1,strata =
>"cerebrovascular.pt",factorVars = catVars)
>print(my.tab2)
>summary(my.tab2)
this package is properly installed,and the chunk works fine if i just run it by itself (such as with CTRL ALT C), and of course it works when ran through the console.
i have a similar problem inn a different chunk with package 'e1071'.
other packages in the rest of the code chunks work fine.
i"l appreciate any help!
thanx.
t.
r-markdown
asked Nov 14 '18 at 13:41
Tomer MannTomer Mann
61
add a comment |
i'm having problems knitting an R markdown document. the particular chunk that's giving mt trouble uses the "tableone" package, and gives the following error:
"Error in library(tableone): there is no package called 'tableone' "
the code chunk is (if necessary i'll upload some of the the actual data):
>pt.table1<-patient.table[,-unwanted.cols]%>%tbl_df()
>catVars<-pt.table1[sapply(pt.table1,class)=="integer"]%>%colnames()
>my.tab2<-CreateTableOne(data = pt.table1,strata =
>"cerebrovascular.pt",factorVars = catVars)
>print(my.tab2)
>summary(my.tab2)
this package is properly installed,and the chunk works fine if i just run it by itself (such as with CTRL ALT C), and of course it works when ran through the console.
i have a similar problem inn a different chunk with package 'e1071'.
other packages in the rest of the code chunks work fine.
i"l appreciate any help!
thanx.
t.
r-markdown
asked Nov 14 '18 at 13:41
Tomer MannTomer Mann
61
i'm having problems knitting an R markdown document. the particular chunk that's giving mt trouble uses the "tableone" package, and gives the following error:
"Error in library(tableone): there is no package called 'tableone' "
the code chunk is (if necessary i'll upload some of the the actual data):
>pt.table1<-patient.table[,-unwanted.cols]%>%tbl_df()
>catVars<-pt.table1[sapply(pt.table1,class)=="integer"]%>%colnames()
>my.tab2<-CreateTableOne(data = pt.table1,strata =
>"cerebrovascular.pt",factorVars = catVars)
>print(my.tab2)
>summary(my.tab2)
this package is properly installed,and the chunk works fine if i just run it by itself (such as with CTRL ALT C), and of course it works when ran through the console.
i have a similar problem inn a different chunk with package 'e1071'.
other packages in the rest of the code chunks work fine.
i"l appreciate any help!
thanx.
t.
r-markdown
r-markdown
asked Nov 14 '18 at 13:41
Tomer MannTomer Mann
61
asked Nov 14 '18 at 13:41
Tomer MannTomer Mann
61
asked Nov 14 '18 at 13:41
Tomer MannTomer Mann
61
asked Nov 14 '18 at 13:41
Tomer MannTomer Mann
61
asked Nov 14 '18 at 13:41
Tomer MannTomer Mann
61
61
add a comment |
add a comment |
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