Error when using sobolSmthSpl function in R









up vote
0
down vote

favorite












I'm trying to use the sensitivity package to calculate sobol sensitivity indices from my parameters and model outputs. This function sobolSmthSpl in the package is supposed to do this but I just keep getting the error



 Error: $ operator is invalid for atomic vectors
In addition: Warning message:
In parallel::mclapply(1:ncol(Y), function(i) smooth.spline(X[, i], :
all scheduled cores encountered errors in user code*


I've made the classes of the variables the same to the example, but just can't get rid of the error. Has anyone used this function before or have met a similar problem?



Here is the code of the function



 function (Y, X) 

ANS = list()
ANS[["call"]] = match.call()
ANS[["X"]] = X
ANS[["Y"]] = Y
par.names = colnames(X)
if (is.null(colnames(X)))
par.names = paste0("X", 1:ncol(X))
X = normalize(X)
Y = Y - mean(Y)
Y = sapply(1:ncol(X), function(i) return(Y[order(X[, i])]))
X = sapply(1:ncol(X), function(i) return(X[order(X[, i]),
i]))
SMTH = optSmooth(Y, X, c(-2, 2))
SA.tab = t(sapply(SMTH, est.Si))
colnames(SA.tab) = c("Si", "se", "q0.05")
rownames(SA.tab) = par.names
ANS[["S"]] = SA.tab
class(ANS) = "sobolSmthSpl"
return(ANS)










share|improve this question

























    up vote
    0
    down vote

    favorite












    I'm trying to use the sensitivity package to calculate sobol sensitivity indices from my parameters and model outputs. This function sobolSmthSpl in the package is supposed to do this but I just keep getting the error



     Error: $ operator is invalid for atomic vectors
    In addition: Warning message:
    In parallel::mclapply(1:ncol(Y), function(i) smooth.spline(X[, i], :
    all scheduled cores encountered errors in user code*


    I've made the classes of the variables the same to the example, but just can't get rid of the error. Has anyone used this function before or have met a similar problem?



    Here is the code of the function



     function (Y, X) 

    ANS = list()
    ANS[["call"]] = match.call()
    ANS[["X"]] = X
    ANS[["Y"]] = Y
    par.names = colnames(X)
    if (is.null(colnames(X)))
    par.names = paste0("X", 1:ncol(X))
    X = normalize(X)
    Y = Y - mean(Y)
    Y = sapply(1:ncol(X), function(i) return(Y[order(X[, i])]))
    X = sapply(1:ncol(X), function(i) return(X[order(X[, i]),
    i]))
    SMTH = optSmooth(Y, X, c(-2, 2))
    SA.tab = t(sapply(SMTH, est.Si))
    colnames(SA.tab) = c("Si", "se", "q0.05")
    rownames(SA.tab) = par.names
    ANS[["S"]] = SA.tab
    class(ANS) = "sobolSmthSpl"
    return(ANS)










    share|improve this question























      up vote
      0
      down vote

      favorite









      up vote
      0
      down vote

      favorite











      I'm trying to use the sensitivity package to calculate sobol sensitivity indices from my parameters and model outputs. This function sobolSmthSpl in the package is supposed to do this but I just keep getting the error



       Error: $ operator is invalid for atomic vectors
      In addition: Warning message:
      In parallel::mclapply(1:ncol(Y), function(i) smooth.spline(X[, i], :
      all scheduled cores encountered errors in user code*


      I've made the classes of the variables the same to the example, but just can't get rid of the error. Has anyone used this function before or have met a similar problem?



      Here is the code of the function



       function (Y, X) 

      ANS = list()
      ANS[["call"]] = match.call()
      ANS[["X"]] = X
      ANS[["Y"]] = Y
      par.names = colnames(X)
      if (is.null(colnames(X)))
      par.names = paste0("X", 1:ncol(X))
      X = normalize(X)
      Y = Y - mean(Y)
      Y = sapply(1:ncol(X), function(i) return(Y[order(X[, i])]))
      X = sapply(1:ncol(X), function(i) return(X[order(X[, i]),
      i]))
      SMTH = optSmooth(Y, X, c(-2, 2))
      SA.tab = t(sapply(SMTH, est.Si))
      colnames(SA.tab) = c("Si", "se", "q0.05")
      rownames(SA.tab) = par.names
      ANS[["S"]] = SA.tab
      class(ANS) = "sobolSmthSpl"
      return(ANS)










      share|improve this question













      I'm trying to use the sensitivity package to calculate sobol sensitivity indices from my parameters and model outputs. This function sobolSmthSpl in the package is supposed to do this but I just keep getting the error



       Error: $ operator is invalid for atomic vectors
      In addition: Warning message:
      In parallel::mclapply(1:ncol(Y), function(i) smooth.spline(X[, i], :
      all scheduled cores encountered errors in user code*


      I've made the classes of the variables the same to the example, but just can't get rid of the error. Has anyone used this function before or have met a similar problem?



      Here is the code of the function



       function (Y, X) 

      ANS = list()
      ANS[["call"]] = match.call()
      ANS[["X"]] = X
      ANS[["Y"]] = Y
      par.names = colnames(X)
      if (is.null(colnames(X)))
      par.names = paste0("X", 1:ncol(X))
      X = normalize(X)
      Y = Y - mean(Y)
      Y = sapply(1:ncol(X), function(i) return(Y[order(X[, i])]))
      X = sapply(1:ncol(X), function(i) return(X[order(X[, i]),
      i]))
      SMTH = optSmooth(Y, X, c(-2, 2))
      SA.tab = t(sapply(SMTH, est.Si))
      colnames(SA.tab) = c("Si", "se", "q0.05")
      rownames(SA.tab) = par.names
      ANS[["S"]] = SA.tab
      class(ANS) = "sobolSmthSpl"
      return(ANS)







      r






      share|improve this question













      share|improve this question











      share|improve this question




      share|improve this question










      asked Nov 10 at 20:40









      Mingyang Guo

      143




      143



























          active

          oldest

          votes











          Your Answer






          StackExchange.ifUsing("editor", function ()
          StackExchange.using("externalEditor", function ()
          StackExchange.using("snippets", function ()
          StackExchange.snippets.init();
          );
          );
          , "code-snippets");

          StackExchange.ready(function()
          var channelOptions =
          tags: "".split(" "),
          id: "1"
          ;
          initTagRenderer("".split(" "), "".split(" "), channelOptions);

          StackExchange.using("externalEditor", function()
          // Have to fire editor after snippets, if snippets enabled
          if (StackExchange.settings.snippets.snippetsEnabled)
          StackExchange.using("snippets", function()
          createEditor();
          );

          else
          createEditor();

          );

          function createEditor()
          StackExchange.prepareEditor(
          heartbeatType: 'answer',
          convertImagesToLinks: true,
          noModals: true,
          showLowRepImageUploadWarning: true,
          reputationToPostImages: 10,
          bindNavPrevention: true,
          postfix: "",
          imageUploader:
          brandingHtml: "Powered by u003ca class="icon-imgur-white" href="https://imgur.com/"u003eu003c/au003e",
          contentPolicyHtml: "User contributions licensed under u003ca href="https://creativecommons.org/licenses/by-sa/3.0/"u003ecc by-sa 3.0 with attribution requiredu003c/au003e u003ca href="https://stackoverflow.com/legal/content-policy"u003e(content policy)u003c/au003e",
          allowUrls: true
          ,
          onDemand: true,
          discardSelector: ".discard-answer"
          ,immediatelyShowMarkdownHelp:true
          );



          );













           

          draft saved


          draft discarded


















          StackExchange.ready(
          function ()
          StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2fstackoverflow.com%2fquestions%2f53243200%2ferror-when-using-sobolsmthspl-function-in-r%23new-answer', 'question_page');

          );

          Post as a guest















          Required, but never shown






























          active

          oldest

          votes













          active

          oldest

          votes









          active

          oldest

          votes






          active

          oldest

          votes















           

          draft saved


          draft discarded















































           


          draft saved


          draft discarded














          StackExchange.ready(
          function ()
          StackExchange.openid.initPostLogin('.new-post-login', 'https%3a%2f%2fstackoverflow.com%2fquestions%2f53243200%2ferror-when-using-sobolsmthspl-function-in-r%23new-answer', 'question_page');

          );

          Post as a guest















          Required, but never shown





















































          Required, but never shown














          Required, but never shown












          Required, but never shown







          Required, but never shown

































          Required, but never shown














          Required, but never shown












          Required, but never shown







          Required, but never shown







          Popular posts from this blog

          Top Tejano songwriter Luis Silva dead of heart attack at 64

          ReactJS Fetched API data displays live - need Data displayed static

          政党