Error on Rcpp::depends when using sourceCpp and RcppArmadillo
The code can run through on my desktop. I tried to run it on a server and got error Error: Package 'RcppArmadillo' referenced from Rcpp::depends in source file is not available. I wonder if something wrong when I installed the packages but I have no idea how to fix it.
The R script is like this
> library(Rcpp,lib="~/R_libs")
> library(RcppArmadillo,lib="~/R_libs")
> library(gtools,lib="~/R_libs")
> Rcpp::sourceCpp('~/Test/probit2.cpp')
Error: Package 'RcppArmadillo' referenced from Rcpp::depends in source
file probit2.cpp is not available.`
And the cpp file begins with this
#include "RcppArmadillo.h"
// [[Rcpp::depends(RcppArmadillo)]]
using namespace Rcpp;
Thanks in advance!
rcpp
asked Nov 14 '18 at 4:24
yingying
11
add a comment |
The code can run through on my desktop. I tried to run it on a server and got error Error: Package 'RcppArmadillo' referenced from Rcpp::depends in source file is not available. I wonder if something wrong when I installed the packages but I have no idea how to fix it.
The R script is like this
> library(Rcpp,lib="~/R_libs")
> library(RcppArmadillo,lib="~/R_libs")
> library(gtools,lib="~/R_libs")
> Rcpp::sourceCpp('~/Test/probit2.cpp')
Error: Package 'RcppArmadillo' referenced from Rcpp::depends in source
file probit2.cpp is not available.`
And the cpp file begins with this
#include "RcppArmadillo.h"
// [[Rcpp::depends(RcppArmadillo)]]
using namespace Rcpp;
Thanks in advance!
rcpp
asked Nov 14 '18 at 4:24
yingying
11
2
Have you tried to extend R’s library path, cf stackoverflow.com/questions/15170399/…
– Ralf Stubner
Nov 14 '18 at 8:50
2
"What Ralf said" -- set either.libPaths()more permanently, or equivalently one of the environment variables. You tell all thelibrary()commands explicitly but assumesourceCpp()knows magically by itself. It does not, and you need to help it. Seehelp(Startup)for many options.
– Dirk Eddelbuettel
Nov 14 '18 at 11:46
Got it, I set the R_LIBS to my library folder and now it works! Thank you!
– ying
Nov 14 '18 at 17:51
How about adding your solution as an answer?
– Ralf Stubner
Nov 16 '18 at 12:58
add a comment |
The code can run through on my desktop. I tried to run it on a server and got error Error: Package 'RcppArmadillo' referenced from Rcpp::depends in source file is not available. I wonder if something wrong when I installed the packages but I have no idea how to fix it.
The R script is like this
> library(Rcpp,lib="~/R_libs")
> library(RcppArmadillo,lib="~/R_libs")
> library(gtools,lib="~/R_libs")
> Rcpp::sourceCpp('~/Test/probit2.cpp')
Error: Package 'RcppArmadillo' referenced from Rcpp::depends in source
file probit2.cpp is not available.`
And the cpp file begins with this
#include "RcppArmadillo.h"
// [[Rcpp::depends(RcppArmadillo)]]
using namespace Rcpp;
Thanks in advance!
rcpp
asked Nov 14 '18 at 4:24
yingying
11
The code can run through on my desktop. I tried to run it on a server and got error Error: Package 'RcppArmadillo' referenced from Rcpp::depends in source file is not available. I wonder if something wrong when I installed the packages but I have no idea how to fix it.
The R script is like this
> library(Rcpp,lib="~/R_libs")
> library(RcppArmadillo,lib="~/R_libs")
> library(gtools,lib="~/R_libs")
> Rcpp::sourceCpp('~/Test/probit2.cpp')
Error: Package 'RcppArmadillo' referenced from Rcpp::depends in source
file probit2.cpp is not available.`
And the cpp file begins with this
#include "RcppArmadillo.h"
// [[Rcpp::depends(RcppArmadillo)]]
using namespace Rcpp;
Thanks in advance!
rcpp
rcpp
asked Nov 14 '18 at 4:24
yingying
11
asked Nov 14 '18 at 4:24
yingying
11
asked Nov 14 '18 at 4:24
yingying
11
asked Nov 14 '18 at 4:24
yingying
11
asked Nov 14 '18 at 4:24
yingying
11
11
2
Have you tried to extend R’s library path, cf stackoverflow.com/questions/15170399/…
– Ralf Stubner
Nov 14 '18 at 8:50
2
"What Ralf said" -- set either.libPaths()more permanently, or equivalently one of the environment variables. You tell all thelibrary()commands explicitly but assumesourceCpp()knows magically by itself. It does not, and you need to help it. Seehelp(Startup)for many options.
– Dirk Eddelbuettel
Nov 14 '18 at 11:46
Got it, I set the R_LIBS to my library folder and now it works! Thank you!
– ying
Nov 14 '18 at 17:51
How about adding your solution as an answer?
– Ralf Stubner
Nov 16 '18 at 12:58
add a comment |
2
Have you tried to extend R’s library path, cf stackoverflow.com/questions/15170399/…
– Ralf Stubner
Nov 14 '18 at 8:50
2
"What Ralf said" -- set either.libPaths()more permanently, or equivalently one of the environment variables. You tell all thelibrary()commands explicitly but assumesourceCpp()knows magically by itself. It does not, and you need to help it. Seehelp(Startup)for many options.
– Dirk Eddelbuettel
Nov 14 '18 at 11:46
Got it, I set the R_LIBS to my library folder and now it works! Thank you!
– ying
Nov 14 '18 at 17:51
How about adding your solution as an answer?
– Ralf Stubner
Nov 16 '18 at 12:58
2
2
Have you tried to extend R’s library path, cf stackoverflow.com/questions/15170399/…
– Ralf Stubner
Nov 14 '18 at 8:50
Have you tried to extend R’s library path, cf stackoverflow.com/questions/15170399/…
– Ralf Stubner
Nov 14 '18 at 8:50
2
2
"What Ralf said" -- set either
.libPaths() more permanently, or equivalently one of the environment variables. You tell all the library() commands explicitly but assume sourceCpp() knows magically by itself. It does not, and you need to help it. See help(Startup) for many options.– Dirk Eddelbuettel
Nov 14 '18 at 11:46
"What Ralf said" -- set either
.libPaths() more permanently, or equivalently one of the environment variables. You tell all the library() commands explicitly but assume sourceCpp() knows magically by itself. It does not, and you need to help it. See help(Startup) for many options.– Dirk Eddelbuettel
Nov 14 '18 at 11:46
Got it, I set the R_LIBS to my library folder and now it works! Thank you!
– ying
Nov 14 '18 at 17:51
Got it, I set the R_LIBS to my library folder and now it works! Thank you!
– ying
Nov 14 '18 at 17:51
How about adding your solution as an answer?
– Ralf Stubner
Nov 16 '18 at 12:58
How about adding your solution as an answer?
– Ralf Stubner
Nov 16 '18 at 12:58
add a comment |
1 Answer
1
active
oldest
votes
Thanks for all the comments above, I solved this by setting this from the terminal:
export R_LIBS="~/myRlib"
Rscript myscript.r
I could also set .libPaths("~/myRlib") in the R script.
answered Nov 27 '18 at 21:28
yingying
11
add a comment |
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Thanks for all the comments above, I solved this by setting this from the terminal:
export R_LIBS="~/myRlib"
Rscript myscript.r
I could also set .libPaths("~/myRlib") in the R script.
answered Nov 27 '18 at 21:28
yingying
11
add a comment |
Thanks for all the comments above, I solved this by setting this from the terminal:
export R_LIBS="~/myRlib"
Rscript myscript.r
I could also set .libPaths("~/myRlib") in the R script.
answered Nov 27 '18 at 21:28
yingying
11
add a comment |
Thanks for all the comments above, I solved this by setting this from the terminal:
export R_LIBS="~/myRlib"
Rscript myscript.r
I could also set .libPaths("~/myRlib") in the R script.
answered Nov 27 '18 at 21:28
yingying
11
Thanks for all the comments above, I solved this by setting this from the terminal:
export R_LIBS="~/myRlib"
Rscript myscript.r
I could also set .libPaths("~/myRlib") in the R script.
answered Nov 27 '18 at 21:28
yingying
11
answered Nov 27 '18 at 21:28
yingying
11
answered Nov 27 '18 at 21:28
yingying
11
answered Nov 27 '18 at 21:28
yingying
11
11
add a comment |
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2
Have you tried to extend R’s library path, cf stackoverflow.com/questions/15170399/…
– Ralf Stubner
Nov 14 '18 at 8:50
2
"What Ralf said" -- set either
.libPaths()more permanently, or equivalently one of the environment variables. You tell all thelibrary()commands explicitly but assumesourceCpp()knows magically by itself. It does not, and you need to help it. Seehelp(Startup)for many options.– Dirk Eddelbuettel
Nov 14 '18 at 11:46
Got it, I set the R_LIBS to my library folder and now it works! Thank you!
– ying
Nov 14 '18 at 17:51
How about adding your solution as an answer?
– Ralf Stubner
Nov 16 '18 at 12:58