How do I read a non-UTF-8 file in AWS Glue PySpark?










0















I have a glue schema that works for most CSVs. but sometimes clients upload a CSV with CP1252 encoded fields. When I try to do anything with a dynamicFrame from such a file, I get an error:
datasource0.toDF().show(1)



An error occurred while calling o221.toDF.
: org.apache.spark.SparkException: Job aborted due to stage failure: Task 1 in stage 5.0 failed 4 times, most recent failure: Lost task 1.3 in stage 5.0 (TID 17, ip-172-31-11-73.ec2.internal, executor 2): com.amazonaws.services.glue.util.FatalException: Unable to parse file: xxxx11142018.csv


I tried decoding/encoding each line. but it doesn't work:



def sanitizeString(rawValue):
value = re.sub('\s+', ' ', rawValue)
value = re.sub('\\', '', value)
value = value.decode('CP1252').encode('utf-8')
return value

def sanitizeLine(rawLine):
line = rawLine.map(sanitizeString)

datasourceRaw = glueContext.create_dynamic_frame.from_catalog(database = "glue_db", table_name = "glue_table", transformation_ctx = "datasourceRaw")
datasource0 = datasourceRaw.map(sanitizeLine)
# datasource3.toDF().show(1)


It gives the exact same error



I've also tried loading it through RDD, using



rdd0 = sc.textFile(filepath, use_unicode=False)
rdd0 = rdd0.map(sanitizeLine) # have to add an extra line to sanitizeLine() to split() the line
rdd0.toDF().show(2)


this works, but there's 2 problems:



  1. For whatever reason, Its waaayy slower than using the DynamicFrame

  2. It gives me the whole line as a string to map through. I suppose I can split on , but then I want to turn it back into a DynamicFrame and for that I need a schema. I tried getting that from the catalog, but (you guessed it), I get the same error:

-



datasourceRaw = glueContext.create_dynamic_frame.from_catalog(database = "glue_db", table_name = "glue_table", transformation_ctx = "datasourceRaw")
print datasourceRaw.schema()

An error occurred while calling o434.schema.
: org.apache.spark.SparkException: Job aborted due to stage failure: Task 1 in stage 9.0 failed 4 times, most recent failure: Lost task 1.3 in stage 9.0 (TID 47, ip-172-31-11-73.ec2.internal, executor 5): com.amazonaws.services.glue.util.FatalException: Unable to parse file: xxxx_11142018.csv









share|improve this question


























    0















    I have a glue schema that works for most CSVs. but sometimes clients upload a CSV with CP1252 encoded fields. When I try to do anything with a dynamicFrame from such a file, I get an error:
    datasource0.toDF().show(1)



    An error occurred while calling o221.toDF.
    : org.apache.spark.SparkException: Job aborted due to stage failure: Task 1 in stage 5.0 failed 4 times, most recent failure: Lost task 1.3 in stage 5.0 (TID 17, ip-172-31-11-73.ec2.internal, executor 2): com.amazonaws.services.glue.util.FatalException: Unable to parse file: xxxx11142018.csv


    I tried decoding/encoding each line. but it doesn't work:



    def sanitizeString(rawValue):
    value = re.sub('\s+', ' ', rawValue)
    value = re.sub('\\', '', value)
    value = value.decode('CP1252').encode('utf-8')
    return value

    def sanitizeLine(rawLine):
    line = rawLine.map(sanitizeString)

    datasourceRaw = glueContext.create_dynamic_frame.from_catalog(database = "glue_db", table_name = "glue_table", transformation_ctx = "datasourceRaw")
    datasource0 = datasourceRaw.map(sanitizeLine)
    # datasource3.toDF().show(1)


    It gives the exact same error



    I've also tried loading it through RDD, using



    rdd0 = sc.textFile(filepath, use_unicode=False)
    rdd0 = rdd0.map(sanitizeLine) # have to add an extra line to sanitizeLine() to split() the line
    rdd0.toDF().show(2)


    this works, but there's 2 problems:



    1. For whatever reason, Its waaayy slower than using the DynamicFrame

    2. It gives me the whole line as a string to map through. I suppose I can split on , but then I want to turn it back into a DynamicFrame and for that I need a schema. I tried getting that from the catalog, but (you guessed it), I get the same error:

    -



    datasourceRaw = glueContext.create_dynamic_frame.from_catalog(database = "glue_db", table_name = "glue_table", transformation_ctx = "datasourceRaw")
    print datasourceRaw.schema()

    An error occurred while calling o434.schema.
    : org.apache.spark.SparkException: Job aborted due to stage failure: Task 1 in stage 9.0 failed 4 times, most recent failure: Lost task 1.3 in stage 9.0 (TID 47, ip-172-31-11-73.ec2.internal, executor 5): com.amazonaws.services.glue.util.FatalException: Unable to parse file: xxxx_11142018.csv









    share|improve this question
























      0












      0








      0


      0






      I have a glue schema that works for most CSVs. but sometimes clients upload a CSV with CP1252 encoded fields. When I try to do anything with a dynamicFrame from such a file, I get an error:
      datasource0.toDF().show(1)



      An error occurred while calling o221.toDF.
      : org.apache.spark.SparkException: Job aborted due to stage failure: Task 1 in stage 5.0 failed 4 times, most recent failure: Lost task 1.3 in stage 5.0 (TID 17, ip-172-31-11-73.ec2.internal, executor 2): com.amazonaws.services.glue.util.FatalException: Unable to parse file: xxxx11142018.csv


      I tried decoding/encoding each line. but it doesn't work:



      def sanitizeString(rawValue):
      value = re.sub('\s+', ' ', rawValue)
      value = re.sub('\\', '', value)
      value = value.decode('CP1252').encode('utf-8')
      return value

      def sanitizeLine(rawLine):
      line = rawLine.map(sanitizeString)

      datasourceRaw = glueContext.create_dynamic_frame.from_catalog(database = "glue_db", table_name = "glue_table", transformation_ctx = "datasourceRaw")
      datasource0 = datasourceRaw.map(sanitizeLine)
      # datasource3.toDF().show(1)


      It gives the exact same error



      I've also tried loading it through RDD, using



      rdd0 = sc.textFile(filepath, use_unicode=False)
      rdd0 = rdd0.map(sanitizeLine) # have to add an extra line to sanitizeLine() to split() the line
      rdd0.toDF().show(2)


      this works, but there's 2 problems:



      1. For whatever reason, Its waaayy slower than using the DynamicFrame

      2. It gives me the whole line as a string to map through. I suppose I can split on , but then I want to turn it back into a DynamicFrame and for that I need a schema. I tried getting that from the catalog, but (you guessed it), I get the same error:

      -



      datasourceRaw = glueContext.create_dynamic_frame.from_catalog(database = "glue_db", table_name = "glue_table", transformation_ctx = "datasourceRaw")
      print datasourceRaw.schema()

      An error occurred while calling o434.schema.
      : org.apache.spark.SparkException: Job aborted due to stage failure: Task 1 in stage 9.0 failed 4 times, most recent failure: Lost task 1.3 in stage 9.0 (TID 47, ip-172-31-11-73.ec2.internal, executor 5): com.amazonaws.services.glue.util.FatalException: Unable to parse file: xxxx_11142018.csv









      share|improve this question














      I have a glue schema that works for most CSVs. but sometimes clients upload a CSV with CP1252 encoded fields. When I try to do anything with a dynamicFrame from such a file, I get an error:
      datasource0.toDF().show(1)



      An error occurred while calling o221.toDF.
      : org.apache.spark.SparkException: Job aborted due to stage failure: Task 1 in stage 5.0 failed 4 times, most recent failure: Lost task 1.3 in stage 5.0 (TID 17, ip-172-31-11-73.ec2.internal, executor 2): com.amazonaws.services.glue.util.FatalException: Unable to parse file: xxxx11142018.csv


      I tried decoding/encoding each line. but it doesn't work:



      def sanitizeString(rawValue):
      value = re.sub('\s+', ' ', rawValue)
      value = re.sub('\\', '', value)
      value = value.decode('CP1252').encode('utf-8')
      return value

      def sanitizeLine(rawLine):
      line = rawLine.map(sanitizeString)

      datasourceRaw = glueContext.create_dynamic_frame.from_catalog(database = "glue_db", table_name = "glue_table", transformation_ctx = "datasourceRaw")
      datasource0 = datasourceRaw.map(sanitizeLine)
      # datasource3.toDF().show(1)


      It gives the exact same error



      I've also tried loading it through RDD, using



      rdd0 = sc.textFile(filepath, use_unicode=False)
      rdd0 = rdd0.map(sanitizeLine) # have to add an extra line to sanitizeLine() to split() the line
      rdd0.toDF().show(2)


      this works, but there's 2 problems:



      1. For whatever reason, Its waaayy slower than using the DynamicFrame

      2. It gives me the whole line as a string to map through. I suppose I can split on , but then I want to turn it back into a DynamicFrame and for that I need a schema. I tried getting that from the catalog, but (you guessed it), I get the same error:

      -



      datasourceRaw = glueContext.create_dynamic_frame.from_catalog(database = "glue_db", table_name = "glue_table", transformation_ctx = "datasourceRaw")
      print datasourceRaw.schema()

      An error occurred while calling o434.schema.
      : org.apache.spark.SparkException: Job aborted due to stage failure: Task 1 in stage 9.0 failed 4 times, most recent failure: Lost task 1.3 in stage 9.0 (TID 47, ip-172-31-11-73.ec2.internal, executor 5): com.amazonaws.services.glue.util.FatalException: Unable to parse file: xxxx_11142018.csv






      utf-8 character-encoding pyspark etl aws-glue






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      asked Nov 16 '18 at 3:22









      JonTroncosoJonTroncoso

      369214




      369214






















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